I am writing this post not as a guideline, but mainly for self-reference and hopefully a prompt for discussion.
The boom of bioinformatics in recent years is coupled with cheaper technologies and consequently the surge of the amount of data available. The rapid development of the field itself is an anti-estblishment movement - even the most experienced bioinformaticians must spend a significant amount of time getting updated with the resources and toolkits.
Compreesion tar cf - paths-to-archive | pigz -9 -p 32 > archive.tar.gz
I have created this package to create a blank Rmd file by saving a nearly blank Rmd template to the menu when you create Rmd files.
I think it at least follows the first half of the UNIX orthodox: programs that do one thing and do it well.
Reflection: the main purpose for me to create this package, other than making life easier, is to practise how to publish a R package onto github and to install it from there.
I had this quesition when preparing my manuscript and a quick search brings me to this stackoverflow question by Johanna. I find the answer by Henrick to be highly effective, but can be further elaborated so that readers can be clearer about the functions of each line. Thus, I will base my post largely on Henrick’s answer but at the same time add my explanation to the rationale behind the lines.